Zeiss Zen Software For Mac

Forms

Registration forms for the CIF platform

CIF > Imaris satellite license request form

21 downloads156.10 KB

With Light Lab by Carl Zeiss Microscopy, you have a fully interactive spectra configuration tool for fluorescence microscopy at your hands. You easily check the spectral compatibility for over 500 fluorophores in the Spectra Viewer module, see the efficiencies in the Imaging Simulator, and email the configuration to yourself or others in the lab as pdf. Zen is a coloring book for adults. Turn off the notifications. Select a coloring page. Relax, focus, and forget your worries. When you don´t feel like it anymore, stop. Note: While the software is classified as free, it offers in-App Purchases. Unlock Illustrations $8.99.

CIF Registration Form

125 downloads245.21 KB

Guides and Manuals

Documents written by the CIF staff or official manuals to operate our instruments.

CIF Guides

[All] Use of the Airyscan module on the Zeiss LSM 780-880 series

How to correctly setup the Airyscan mode on Zeiss confocals for super-resolution. Written by Yannick Krempp

27 downloads870.79 KB

[Bugnon] Zeiss LSM 780 User Manual

Short user manual written by Yannick Krempp

24 downloads3.96 MB

[Bugnon] Zeiss LSM 710 User Manual

Short user manual written by Yannick Krempp

14 downloads0.00 KB

[All] Zeiss Zen Multitrack setup for faster and cleaner acquisitions

How to correctly setup multitrack channels using Zen on Zeiss confocals [710-780-880 series].

Written by Yannick Krempp

12 downloads1.87 MB

[Bugnon] Leica DMi8 User Guide

Short user manual written by Yannick Krempp

21 downloads2.22 MB

Official Manuals

[All] Zeiss LSM 710,780 User Manual

Zeiss Zen Software For Mac

Official Zeiss Manual

10 downloads6.66 MB

[Bugnon] Leica DMi8 Manual

Official Leica Manual

5 downloads3.97 MB

Free Software

Free versions of commercial software and open-source packages used for image processing and analysis.

Commercial Packages

BrandSoftwareOSDownload page
ZeissZen Lite Zen Blue Edition 3.1Windowshttps://www.zeiss.com/microscopy/int/products/microscope-software/zen.html
LeicaLAS X Core OfflineWindowshttps://webshare.leica-microsystems.com/latest/core/lifescience/
NikonNIS Elements ViewerWindows, Mac OS Xhttps://www.microscope.healthcare.nikon.com/en_EU/products/software/nis-elements/viewer
HammamatsuNDP.View2Windows, Mac OS Xhttps://www.hamamatsu.com/eu/en/product/type/U12388-01/index.html (Scroll down for links)
Various (Adobe, Microsoft, Matlab,…) for academic UNIL users onlyCreative Cloud, Office, Matlab
Windowshttps://www.unil.ch/ci/distrisoft

Open-source or Freeware Packages

Author(s)SoftwareOSDownload page
Eliceiri/LOCI group at the University of Wisconsin-Madison, and the Jug and Tomancak labs at the MPI-CBG in Dresden.Fiji (Image J + plugins)
Windows, Mac OS X, Linuxhttp://fiji.sc/
QuPath is developed at the University of Edinburgh. The software was originally created at the Centre for Cancer Research & Cell Biology at Queen’s University Belfast, as part of research projects funded by Invest Northern Ireland and Cancer Research UK.QuPathWindows, Mac OS X, Linuxhttps://qupath.github.io/
The CellProfiler project team is based in the Carpenter Lab at the Broad Institute of Harvard and MIT. The project was started in 2003 by Anne E. Carpenter and Thouis (Ray) Jones in the Sabatini Laboratory (Whitehead Institute for Biomedical Research) and Golland laboratory (MIT’s CSAIL) and is actively improved and maintained.CellProfiler, Cellprofiler Analyst
Windows, Mac OS Xhttps://cellprofiler.org/releases/
Orbit has been developed at Actelion Pharmaceuticals Ltd, now Idorsia Pharmaceuticals Ltd
by Manuel Stritt.
OrbitWindows, Mac OS X, Linuxhttp://www.orbit.bio/download/
KNIME’s headquarters are based in Zurich, with additional offices in Konstanz, Berlin, and Austin. We’re open for innovation®, so visit us at KNIME.KNIME Analytics
Windows, Mac OS X, Linuxhttps://www.knime.com/downloads/download-knime

Newsletter

The CIF platform edits a yearly newsletter. Find here all the previous issues.

Newsletter - November 2019

2 downloads1.31 MB

Newsletter - June 2018

0 downloads5.87 MB

Plugins, macros and scripts

Plugins, macros and scripts written in various languages (java, python, macro) for extensible software like Fiji

Workshops

Workshop-related documents like slides, outlines or samples.

Live Cell Imaging [Florence Morgenthaler, Luigi Bozzo, 2019]

Critical steps and applications for live cell imaging in widefield & spinning disk confocal microscopy

3 downloads5.17 MB

F-Techniques [Luigi Bozzo, 2019]

Slides of the presentation given by Luigi Bozzo on the various advanced F-Techniques : FRAP, FCS, FRET, FLIM, principle and application.

8 downloads3.60 MB

Using HRM for batch deconvolution [2019, Yannick KREMPP]

Slides of the presentation given by Yannick Krempp on how to use the Huygens remote manager implemented at the CIF to do batch deconvolution.

4 downloads7.87 MB

Deconvolution [2019, Arnaud Paradis]

Slides from the CIF workshop given by Arnaud Paradis on Deconvolution

10 downloads1.84 MB

Microscope Setup Tutorials

Use this link to familarize yourself with any microsocpe at HCBI and setting up its acquisition parameters.

Zeiss Zen Software For Mac

ZEN

For a free copy of ZEN lite image processing software, click here: ZEN lite (Windows only). The HCBI recommends frequent downloads of ZEN to ensure your software is up-to-date and compatible with files from our newest microscopes

Zeiss Zen Software For Macbook Pro

Click here to download the ZEN Blue Image analysis guide.

Zeiss Zen Software For Mac Os

Fiji/ImageJ

For a free copy of Fiji (ImageJ) image processing software, click here: Fiji (Windows or Mac)

Zeiss Zen Software For Mac Download

Click here to be redirected to the extensive Fiji online documentation
Click here for a link to the ImageJ 1 documentation

Zeiss Zen Software For Macbook

Lightsheet .CZI to .TIF converter

The .czi to .tif converter for Lightsheet files is implemented as a Fiji/ImageJ macro. Click here for download, installation and help documents for timelapse/multiview files, and here for tiled files.

For

AxioScan .CZI to .TIF converter

The .czi to .tif converter for Axioscan files is implemented as a Fiji/ImageJ macro. Click here to download the macro script. Make sure your Bioformats plugin is installed and up to date (5.7.2 recomended).

Volocity

Click here to view the Volocity User GuideFree amharic font download for mac.

IMARIS

Click here to download the IMARIS Reference Guide.
Click here to visit the IMARIS Learning Centerhttps://renewsuite326.weebly.com/blog/numark-idj3-driver-download-mac.

volocityuserguide.pdf7.78 MB
image_analysis_guide_revised_01-2014.pdf946 KB